Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs71374822 | chr16:20683663 | G/A | 2.32E-6 | 480 | 16.02 | 15.08 | 42.77 | KM Plot |
| THCA | rs71374827 | chr16:20690877 | A/G | 1.26E-6 | 474 | 16.07 | 15.33 | 42.77 | KM Plot |
| THCA | rs71374828 | chr16:20717731 | C/T | 5.45E-13 | 487 | 16.07 | 14.72 | 13.6 | KM Plot |
| THCA | rs71374832 | chr16:20780386 | C/T | 4.8E-5 | 490 | 16.37 | 14.67 | 17.47 | KM Plot |
| THCA | rs71374833 | chr16:20790688 | A/G | 4.8E-5 | 490 | 16.37 | 14.67 | 17.47 | KM Plot |
| THCA | rs71377676 | chr16:20684239 | CAT/C | 1.07E-6 | 488 | 15.9 | 15.17 | 42.77 | KM Plot |
| THCA | rs71377680 | chr16:20758397 | TA/T | 1.94E-5 | 479 | 16.37 | 14.47 | 17.65 | KM Plot |
| THCA | rs71384483 | chr16:20573271 | T/A | 2.54E-6 | 480 | 15.7 | 17.47 | 17.08 | KM Plot |
| THCA | rs71386955 | chr16:72353575 | C/G | 3.68E-11 | 475 | 16.02 | 15.1 | 14.63 | KM Plot |
| THCA | rs7138838 | chr12:109476016 | C/T | 7.21E-5 | 482 | 15.97 | 15.23 | 12.1 | KM Plot |
| THCA | rs71412098 | chr14:23204108 | T/C | 1.12E-6 | 489 | 15.2 | 17.05 | 21.67 | KM Plot |
| THCA | rs71421959 | chr14:36247509 | G/A | 5.07E-6 | 490 | 15.93 | 16.35 | 8.33 | KM Plot |
| THCA | rs71421960 | chr14:36256272 | A/G | 5.07E-6 | 490 | 15.93 | 16.35 | 8.33 | KM Plot |
| THCA | rs7142439 | chr14:23228425 | T/G | 1.51E-9 | 490 | 15.32 | 16.85 | 19.02 | KM Plot |
| THCA | rs71445955 | chr14:36126710 | T/TA | 5.08E-6 | 489 | 15.93 | 16.63 | 8.33 | KM Plot |